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oligo - Preprocessing tools for oligonucleotide arrays

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

Last updated 23 days ago

microarrayonechanneltwochannelpreprocessingsnpdifferentialexpressionexonarraygeneexpressiondataimport

10.29 score 3 stars 11 packages 532 scripts 2.5k downloads

oligoClasses - Classes for high-throughput arrays supported by oligo and crlmm

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.

Last updated 23 days ago

infrastructure

5.88 score 19 packages 92 scripts 2.4k downloads

crlmm - Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.

Last updated 23 days ago

microarraypreprocessingsnpcopynumbervariation

4.60 score 3 packages 37 scripts 532 downloads

pdInfoBuilder - Platform Design Information Package Builder

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Last updated 23 days ago

annotationinfrastructure

4.42 score 11 scripts 372 downloads